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Is this your freeware software? Submitter

marko
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READ / WRITE REVIEW File Information

Submitted: Oct 27 2009 06:30 PM
Last Updated: Mar 31 2012 03:12 PM
File Size: 57.02MB
Views: 670
Downloads: 15
Will Run On: XP/Vista/7
Author's Site: Click Here
License: Info Not Available

Related Tags

genome analysis

UGENE 1.10.4

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UGENE is a free cross-platform genome analysis suite.

Features

Multiple sequence alignment using MUSCLE 3 and MUSCLE 4;
HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
PCR Primers design using Primer 3;
Protein secondary structure prediction using GOR IV and PSIPRED;
Search for restriction enzymes and integration with REBASE;
Extremely fast repeat finder;
Search for transcription factor binding sites using SITECON;
ORF finder;
Complete Smith-Waterman algorithm implementation.

User Interface

Visual and interactive genome browsing;
Chromatograms visualization;
3D viewer for files in PDB and MMDB formats;
Multiple sequence alignment editor;
Easy to use workflow designer for custom computational workflows.

High performance computing in UGENE

Complete support of modern multicore processors and SSE instructions;
Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;
Integrated solutions for Cell Broadband Engine;
Private solutions for supercomputers and distributed computing.

Cooperation

Can be used for education in schools and universities;
Features to be included into the next release are initiated by users;
UGENE team is ready for collaboration in related projects, both free or commercial

Scanned & Checked: Mar 31 2012 03:12 PM

When we last updated UGENE, we made sure it was still virus and malware free and the developer's site had no proven issues in any of the reputable site advisory services. In the unlikely event you notice any issues, please let us know immediately, otherwise we will schedule this software for another scan the next time it is updated.